Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS16440 | Not Available | Negative | 3383 - 3598 | 7960.48 |
| hypothetical protein | VO01_RS16445 | Not Available | Negative | 4447 - 4770 | 11211.0 |
| b3/4 domain-containing protein | VO01_RS15855 | Not Available | Negative | 4862 - 5578 | 25905.8 |
| helix-turn-helix domain-containing protein | VO01_RS15860 | Not Available | Negative | 5646 - 6251 | 21227.9 |
| ricin domain-containing protein | VO01_RS15865 | Not Available | Negative | 6391 - 7977 | 55586.8 |
| laci family dna-binding transcriptional regulator | VO01_RS15870 | Not Available | Negative | 8188 - 9207 | 36609.4 |
| hypothetical protein | VO01_RS15875 | Not Available | Negative | 9243 - 9815 | 19384.0 |
| carbohydrate abc transporter permease | VO01_RS16890 | Not Available | Negative | 9830 - 10699 | 31950.8 |
| carbohydrate abc transporter permease | VO01_RS17230 | Not Available | Negative | 10696 - 11655 | 34521.5 |
| extracellular solute-binding protein | VO01_RS15890 | Not Available | Negative | 11658 - 13040 | 49315.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
