Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| single-stranded dna-binding protein | VO01_RS15265 | Not Available | Negative | 3190728 - 3191282 | 19168.8 |
| 30s ribosomal protein s6 | VO01_RS15270 | Not Available | Negative | 3191385 - 3191750 | 13450.1 |
| cca trna nucleotidyltransferase | VO01_RS15275 | Not Available | Negative | 3191914 - 3193344 | 53057.4 |
| duf6049 family protein | VO01_RS15280 | Not Available | Positive | 3193436 - 3195724 | 77189.7 |
| murein biosynthesis integral membrane protein murj | VO01_RS15285 | Not Available | Positive | 3195761 - 3197392 | 56481.4 |
| thioredoxin-disulfide reductase | VO01_RS15290 | Not Available | Positive | 3197549 - 3198586 | 36273.8 |
| thioredoxin | VO01_RS15295 | Not Available | Positive | 3198668 - 3198991 | 11756.2 |
| plp-dependent aminotransferase family protein | VO01_RS15300 | Not Available | Positive | 3199137 - 3200459 | 47992.4 |
| d-alanine--d-alanine ligase | VO01_RS15305 | Not Available | Positive | 3200503 - 3201468 | 33332.7 |
| parb/repb/spo0j family partition protein | VO01_RS15310 | Not Available | Negative | 3201534 - 3202535 | 36066.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
