Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf308 domain-containing protein | VO01_RS15210 | Not Available | Negative | 3180961 - 3181635 | 22722.9 |
| polyphosphate--glucose phosphotransferase | VO01_RS15220 | Not Available | Positive | 3181955 - 3182839 | 30660.7 |
| glycerate kinase | VO01_RS15225 | Not Available | Positive | 3182910 - 3184025 | 36294.0 |
| glycosyltransferase | VO01_RS15230 | Not Available | Negative | 3184042 - 3185274 | 42521.9 |
| merr family transcriptional regulator | VO01_RS15235 | Not Available | Positive | 3185455 - 3185844 | 14569.4 |
| peptide chain release factor 3 | VO01_RS15240 | Not Available | Positive | 3185907 - 3187532 | 59123.4 |
| chy zinc finger protein | VO01_RS15245 | Not Available | Positive | 3187603 - 3188022 | 14186.8 |
| replicative dna helicase | VO01_RS15250 | Not Available | Negative | 3188129 - 3189508 | 49648.5 |
| 50s ribosomal protein l9 | VO01_RS15255 | Not Available | Negative | 3189964 - 3190416 | 16090.5 |
| 30s ribosomal protein s18 | VO01_RS15260 | Not Available | Negative | 3190428 - 3190691 | 9434.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
