Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrolipoamide acetyltransferase family protein | VO01_RS15160 | Not Available | Negative | 3171640 - 3173046 | 49209.1 |
| alpha-ketoacid dehydrogenase subunit beta | VO01_RS15165 | Not Available | Negative | 3173103 - 3174068 | 35001.0 |
| thiamine pyrophosphate-dependent dehydrogenase e1 component subunit alpha | VO01_RS15170 | Not Available | Negative | 3174155 - 3175267 | 40410.8 |
| pyridoxal phosphate-dependent aminotransferase | VO01_RS15175 | Not Available | Negative | 3175277 - 3176392 | 39473.1 |
| phage holin family protein | VO01_RS15180 | Not Available | Positive | 3176463 - 3176858 | 13848.6 |
| hypothetical protein | VO01_RS15185 | Not Available | Negative | 3176867 - 3178228 | 46199.3 |
| hypothetical protein | VO01_RS15190 | Not Available | Negative | 3178225 - 3178551 | 10678.5 |
| low molecular weight protein-tyrosine-phosphatase | VO01_RS15195 | Not Available | Positive | 3178683 - 3179210 | 19152.8 |
| adenylosuccinate lyase | VO01_RS15200 | Not Available | Positive | 3179224 - 3180606 | 50460.2 |
| hypothetical protein | VO01_RS15205 | Not Available | Negative | 3180689 - 3180958 | 9733.91 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
