Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf998 domain-containing protein | VO01_RS15110 | Not Available | Positive | 3164224 - 3164889 | 22139.2 |
| cytochrome c oxidase assembly protein | VO01_RS15115 | Not Available | Negative | 3164938 - 3166917 | 70661.5 |
| hu family dna-binding protein | VO01_RS15120 | Not Available | Negative | 3167040 - 3167327 | 9679.55 |
| 30s ribosomal protein s14 | VO01_RS15125 | Not Available | Negative | 3167459 - 3167764 | 11479.9 |
| 50s ribosomal protein l33 | VO01_RS15130 | Not Available | Negative | 3167767 - 3167934 | 6615.03 |
| 50s ribosomal protein l28 | VO01_RS15135 | Not Available | Negative | 3167934 - 3168170 | 8666.69 |
| fur family transcriptional regulator | VO01_RS15140 | Not Available | Negative | 3168366 - 3168809 | 15479.0 |
| metal abc transporter permease | VO01_RS15145 | Not Available | Negative | 3168806 - 3169732 | 31249.2 |
| metal abc transporter atp-binding protein | VO01_RS15150 | Not Available | Negative | 3169729 - 3170619 | 31545.3 |
| metal abc transporter substrate-binding protein | VO01_RS15155 | Not Available | Negative | 3170616 - 3171569 | 32612.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
