Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent recd-like dna helicase | VO01_RS15060 | Not Available | Negative | 3155322 - 3156623 | 47973.2 |
| hypothetical protein | VO01_RS15065 | Not Available | Positive | 3156754 - 3157773 | 35419.6 |
| voc family protein | VO01_RS15070 | Not Available | Positive | 3157889 - 3158311 | 14669.4 |
| abc transporter atp-binding protein | VO01_RS15075 | Not Available | Negative | 3158334 - 3159170 | 29791.8 |
| feccd family abc transporter permease | VO01_RS15080 | Not Available | Negative | 3159187 - 3160278 | 36480.6 |
| feccd family abc transporter permease | VO01_RS15085 | Not Available | Negative | 3160275 - 3161333 | 34908.6 |
| iron-siderophore abc transporter substrate-binding protein | VO01_RS15090 | Not Available | Positive | 3161428 - 3162432 | 34486.2 |
| transcriptional regulator | VO01_RS15095 | Not Available | Negative | 3162498 - 3162788 | 10719.0 |
| hypothetical protein | VO01_RS15100 | Not Available | Negative | 3162781 - 3163464 | 23790.1 |
| hypothetical protein | VO01_RS15105 | Not Available | Positive | 3163658 - 3164239 | 19921.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
