Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s6 | VO01_RS17925 | Not Available | Negative | 3139464 - 3139721 | 9245.27 |
| hypothetical protein | VO01_RS14965 | Not Available | Negative | 3139769 - 3140857 | 38111.0 |
| sdr family oxidoreductase | VO01_RS14970 | Not Available | Positive | 3141071 - 3141817 | 26367.4 |
| gfo/idh/moca family protein | VO01_RS14975 | Not Available | Positive | 3141895 - 3142908 | 34788.7 |
| nad(p)h-dependent oxidoreductase | VO01_RS14980 | Not Available | Positive | 3143040 - 3143591 | 19136.6 |
| zinc-dependent alcohol dehydrogenase | VO01_RS14985 | Not Available | Negative | 3143686 - 3144861 | 42117.8 |
| hypothetical protein | VO01_RS14990 | Not Available | Negative | 3145245 - 3145592 | 12575.5 |
| hypothetical protein | VO01_RS14995 | Not Available | Negative | 3145713 - 3146036 | 12321.7 |
| manganese catalase family protein | VO01_RS15000 | Not Available | Positive | 3146365 - 3147249 | 31476.2 |
| mbl fold metallo-hydrolase | VO01_RS15005 | Not Available | Positive | 3147356 - 3148135 | 26960.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
