Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lrp/asnc family transcriptional regulator | VO01_RS14915 | Not Available | Positive | 3129639 - 3130133 | 17578.0 |
| dctp deaminase | VO01_RS14920 | Not Available | Negative | 3130159 - 3130764 | 22047.1 |
| Trna-gly | Not Available | Not Available | Positive | 3130847 - 3130920 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 3131008 - 3131080 | Not Available |
| aaa family atpase | VO01_RS17155 | Not Available | Positive | 3131190 - 3133538 | 86528.0 |
| gntp family permease | VO01_RS14940 | Not Available | Positive | 3134079 - 3135479 | 47848.8 |
| hypothetical protein | VO01_RS17160 | Not Available | Positive | 3135860 - 3137200 | 45932.0 |
| bacteriorhodopsin-like | VO01_RS14950 | Not Available | Positive | 3137424 - 3138251 | 30161.1 |
| pyridoxamine 5'-phosphate oxidase family protein | VO01_RS14955 | Not Available | Negative | 3138270 - 3138854 | 20750.2 |
| hypothetical protein | VO01_RS17920 | Not Available | Negative | 3138913 - 3139305 | 14207.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
