Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS14665 | Not Available | Positive | 3085439 - 3085792 | 12597.5 |
| hypothetical protein | VO01_RS14670 | Not Available | Positive | 3085830 - 3086435 | 20690.5 |
| is481-like element is1122 family transposase | VO01_RS14675 | Not Available | Negative | 3086475 - 3087434 | 35987.6 |
| hypothetical protein | VO01_RS14680 | Not Available | Negative | 3087532 - 3087837 | 10376.2 |
| zip family metal transporter | VO01_RS14690 | Not Available | Positive | 3088103 - 3088840 | 24341.1 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS14695 | Not Available | Negative | 3088883 - 3089371 | 17479.8 |
| mind/para family protein | VO01_RS14700 | Not Available | Positive | 3089563 - 3091341 | 61751.4 |
| mate family efflux transporter | VO01_RS14705 | Not Available | Positive | 3091428 - 3092756 | 44203.3 |
| aldo/keto reductase | VO01_RS14710 | Not Available | Negative | 3092772 - 3093632 | 30294.7 |
| hypothetical protein | VO01_RS14715 | Not Available | Negative | 3093656 - 3094102 | 14383.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
