Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homocysteine s-methyltransferase | VO01_RS14565 | Not Available | Positive | 3067543 - 3068448 | 31417.9 |
| nad(p)h-binding protein | VO01_RS14570 | Not Available | Negative | 3068552 - 3069415 | 28946.1 |
| winged helix-turn-helix transcriptional regulator | VO01_RS14575 | Not Available | Positive | 3069528 - 3069908 | 14195.2 |
| mfs transporter | VO01_RS14580 | Not Available | Positive | 3069984 - 3071264 | 43209.6 |
| hypothetical protein | VO01_RS14585 | Not Available | Positive | 3071425 - 3071910 | 16238.8 |
| duf305 domain-containing protein | VO01_RS14590 | Not Available | Positive | 3072012 - 3072596 | 20920.4 |
| m23 family metallopeptidase | VO01_RS14595 | Not Available | Positive | 3072881 - 3073615 | 24993.5 |
| oxidoreductase | VO01_RS14600 | Not Available | Positive | 3073829 - 3074695 | 30653.5 |
| hypothetical protein | VO01_RS14605 | Not Available | Positive | 3074692 - 3074961 | 8926.81 |
| yidh family protein | VO01_RS14610 | Not Available | Positive | 3074958 - 3075359 | 13918.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
