Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | VO01_RS14465 | Not Available | Negative | 3049556 - 3050806 | 40800.8 |
| arsr/smtb family transcription factor | VO01_RS14470 | Not Available | Negative | 3050803 - 3051372 | 19989.8 |
| tyrosine-protein phosphatase | VO01_RS14475 | Not Available | Positive | 3051471 - 3052208 | 26446.3 |
| eama family transporter | VO01_RS16405 | Not Available | Negative | 3052234 - 3052548 | 10471.3 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | VO01_RS14485 | Not Available | Negative | 3052942 - 3054702 | 61124.7 |
| pld nuclease n-terminal domain-containing protein | VO01_RS14490 | Not Available | Negative | 3054707 - 3055141 | 15380.4 |
| duf4229 domain-containing protein | VO01_RS14495 | Not Available | Positive | 3055280 - 3055597 | 11204.4 |
| hypothetical protein | VO01_RS14500 | Not Available | Negative | 3055586 - 3056092 | 17417.5 |
| hypothetical protein | VO01_RS14505 | Not Available | Negative | 3056175 - 3056561 | 13964.3 |
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | VO01_RS14510 | Not Available | Negative | 3056591 - 3057574 | 33813.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
