Clavibacter michiganensis subsp. insidiosus strain R1-1

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Clavibacter

Description

Clavibacter michiganensis subsp. insidiosus strain R1-1 is a Gram-positive, aerobic bacterium characterized by its rod shape and the presence of flagella. It exhibits a cell arrangement of both pairs and singles, and it is non-motile. This strain thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range. The strain is classified as free-living and has a diverse range of host plants, including Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), Solanum melongena (eggplant), Zea mays subsp. mays (maize), and Medicago sativa (alfalfa), among others from the Solanaceae, Fabaceae, and Poaceae families. C. michiganensis subsp. insidiosus strain R1-1 is known for its pathogenic effects, which include causing bacterial wilt and canker in various hosts. Specific health effects linked to this strain involve diseases such as Goss's wilt, bacterial canker of pepper, and potato ring rot. It also contributes to bacterial wilt of alfalfa and is pathogenic to eggplant, demonstrating its capacity to affect multiple crops. The presence of four replicons and a single membrane indicates a stable genetic structure that may contribute to its adaptability and pathogenic potential. The ecological significance of this strain lies in its ability to impact agriculture by causing severe plant diseases, which can lead to substantial economic losses in affected crops. Understanding this pathogen's traits is crucial for managing its effects on agricultural productivity.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusClavibacter
SpeciesClavibacter michiganensis
Strainsubsp. insidiosus strain R1-1

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Clavibacter michiganensis subsp. insidiosus strain R1-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Triticum aestivum, Solanum tuberosum, Solanum lycopersicum
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
Pathogenicityeggplant

Genome Summary

Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid

Gene Summary

Adenine Count

7938 bp

Thymine Count

7426 bp

Guanine Count

15813 bp

Cytosine Count

16513 bp

Genome Length

47690 bp

Protein-coding Genes

48 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mfs transporterVO01_RS14465Not AvailableNegative3049556 - 305080640800.8
arsr/smtb family transcription factorVO01_RS14470Not AvailableNegative3050803 - 305137219989.8
tyrosine-protein phosphataseVO01_RS14475Not AvailablePositive3051471 - 305220826446.3
eama family transporterVO01_RS16405Not AvailableNegative3052234 - 305254810471.3
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthaseVO01_RS14485Not AvailableNegative3052942 - 305470261124.7
pld nuclease n-terminal domain-containing proteinVO01_RS14490Not AvailableNegative3054707 - 305514115380.4
duf4229 domain-containing proteinVO01_RS14495Not AvailablePositive3055280 - 305559711204.4
hypothetical proteinVO01_RS14500Not AvailableNegative3055586 - 305609217417.5
hypothetical proteinVO01_RS14505Not AvailableNegative3056175 - 305656113964.3
1,4-dihydroxy-2-naphthoate polyprenyltransferaseVO01_RS14510Not AvailableNegative3056591 - 305757433813.9

Displaying genes 3071 – 3080 of 3331 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Goss s wiltCausesPMC6622472
Bacterial wiltCausesPMC9190982
CankerCausesPMC9190982
Bacterial wilt and canker of tomatoCausesPMC9190982
Potato ring rotCausesPMC9190982
Gross's wilt of maizeCausesPMC9190982
Bacterial canker of pepperCausesPMC9190982
Bacterial wilt of alfalfaCausesPMC9190982
Bacterial mosaic of wheatCausesPMC9190982
Bean leaf yellowingCausesPMC9190982

Displaying health effects 1 – 10 of 15 in total