Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldo/keto reductase | VO01_RS14415 | Not Available | Negative | 3040031 - 3041017 | 34183.6 |
| Trna-tyr | Not Available | Not Available | Positive | 3041129 - 3041213 | Not Available |
| yajq family cyclic di-gmp-binding protein | VO01_RS14425 | Not Available | Positive | 3041343 - 3041831 | 18146.6 |
| cardiolipin synthase | VO01_RS14430 | Not Available | Positive | 3041913 - 3043382 | 56109.0 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS14435 | Not Available | Negative | 3043410 - 3043880 | 17483.8 |
| prepilin peptidase | VO01_RS14440 | Not Available | Negative | 3044003 - 3044686 | 21187.6 |
| fad-dependent oxidoreductase | VO01_RS14445 | Not Available | Negative | 3044823 - 3046193 | 50369.6 |
| polyprenyl synthetase family protein | VO01_RS14450 | Not Available | Negative | 3046284 - 3047357 | 38450.7 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | VO01_RS14455 | Not Available | Negative | 3047391 - 3048125 | 26164.0 |
| isochorismate synthase menf | VO01_RS14460 | Not Available | Positive | 3048285 - 3049559 | 43703.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
