Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein rada | VO01_RS14215 | Not Available | Positive | 3006574 - 3007935 | 47729.5 |
| arsr/smtb family transcription factor | VO01_RS14220 | Not Available | Negative | 3007975 - 3008289 | 11136.2 |
| hypothetical protein | VO01_RS14225 | Not Available | Negative | 3008401 - 3008568 | 6279.82 |
| hypothetical protein | VO01_RS14230 | Not Available | Negative | 3008686 - 3009360 | 22739.3 |
| amino-acid n-acetyltransferase | VO01_RS14235 | Not Available | Negative | 3009448 - 3009990 | 19756.8 |
| hypothetical protein | VO01_RS14240 | Not Available | Negative | 3010042 - 3010287 | 8615.86 |
| hypothetical protein | VO01_RS14245 | Not Available | Positive | 3010455 - 3010931 | 17137.9 |
| sensor histidine kinase | VO01_RS14250 | Not Available | Negative | 3010943 - 3012589 | 56970.7 |
| response regulator transcription factor | VO01_RS14255 | Not Available | Negative | 3012586 - 3013359 | 28478.2 |
| tetratricopeptide repeat protein | VO01_RS14260 | Not Available | Negative | 3013430 - 3014236 | 29210.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
