Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2510 domain-containing protein | VO01_RS17140 | Not Available | Negative | 2995865 - 2996482 | 22047.6 |
| hypothetical protein | VO01_RS16785 | Not Available | Positive | 2996726 - 2996878 | 5056.39 |
| k(+)-transporting atpase subunit f | VO01_RS14180 | Not Available | Positive | 2996875 - 2996979 | 3542.43 |
| potassium-transporting atpase subunit kdpa | VO01_RS14185 | Not Available | Positive | 2996979 - 2998655 | 58362.9 |
| potassium-transporting atpase subunit kdpb | VO01_RS14190 | Not Available | Positive | 2998652 - 3000802 | 73582.5 |
| potassium-transporting atpase subunit kdpc | VO01_RS14195 | Not Available | Positive | 3000845 - 3001453 | 20597.8 |
| duf4118 domain-containing protein | VO01_RS14200 | Not Available | Positive | 3001486 - 3004032 | 89648.5 |
| response regulator | VO01_RS14205 | Not Available | Positive | 3004029 - 3004778 | 27329.8 |
| sgnh/gdsl hydrolase family protein | VO01_RS14210 | Not Available | Positive | 3004788 - 3005564 | 27784.7 |
| hypothetical protein | VO01_RS17145 | Not Available | Negative | 3005749 - 3006198 | 15798.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
