Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease subunit | VO01_RS14080 | Not Available | Positive | 2980389 - 2981384 | 36360.9 |
| dmt family transporter | VO01_RS14085 | Not Available | Negative | 2981409 - 2981732 | 10770.6 |
| abc transporter substrate-binding protein | VO01_RS14090 | Not Available | Negative | 2981858 - 2983216 | 47190.1 |
| alpha/beta hydrolase fold domain-containing protein | VO01_RS14095 | Not Available | Negative | 2983313 - 2984230 | 32522.6 |
| class ii fructose-bisphosphatase | VO01_RS14100 | Not Available | Negative | 2984253 - 2985239 | 34365.8 |
| ai-2e family transporter | VO01_RS14105 | Not Available | Negative | 2985236 - 2986456 | 42298.7 |
| abc transporter atp-binding protein | VO01_RS14110 | Not Available | Negative | 2986645 - 2987370 | 24868.0 |
| 30s ribosomal protein s6 | VO01_RS14115 | Not Available | Negative | 2987367 - 2988220 | 28809.2 |
| 30s ribosomal protein s6 | VO01_RS14120 | Not Available | Positive | 2988430 - 2988558 | 4336.37 |
| Trna-ser | Not Available | Not Available | Positive | 2988665 - 2988754 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
