Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS00885 | Not Available | Positive | 179417 - 179656 | 9097.43 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | VO01_RS00890 | Not Available | Positive | 179702 - 180124 | 15440.5 |
| llm class flavin-dependent oxidoreductase | VO01_RS00895 | Not Available | Negative | 180152 - 181201 | 37759.5 |
| duf2200 domain-containing protein | VO01_RS00900 | Not Available | Positive | 181329 - 181673 | 13067.8 |
| duf2283 domain-containing protein | VO01_RS00905 | Not Available | Negative | 181670 - 181897 | 7554.99 |
| tetr/acrr family transcriptional regulator | VO01_RS00910 | Not Available | Negative | 181897 - 182472 | 20892.9 |
| zinc-binding alcohol dehydrogenase family protein | VO01_RS00915 | Not Available | Positive | 182569 - 183702 | 39163.4 |
| rhodanese-like domain-containing protein | VO01_RS00920 | Not Available | Positive | 183749 - 184048 | 10251.9 |
| ydei/ompd-associated family protein | VO01_RS00925 | Not Available | Positive | 184089 - 184673 | 21179.9 |
| gnat family n-acetyltransferase | VO01_RS00930 | Not Available | Negative | 184683 - 185261 | 21629.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
