Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase family protein | VO01_RS15450 | Not Available | Positive | 17805 - 19189 | 50823.6 |
| aaa family atpase | VO01_RS15455 | Not Available | Positive | 19189 - 19992 | 30962.1 |
| recombinase family protein | VO01_RS15460 | Not Available | Positive | 20115 - 20507 | 14144.8 |
| hypothetical protein | VO01_RS17930 | Not Available | Negative | 20703 - 21377 | 24308.8 |
| expansin exlx1 family cellulose-binding protein | VO01_RS15470 | Not Available | Negative | 21503 - 23629 | 73627.3 |
| hypothetical protein | VO01_RS15475 | Not Available | Positive | 24092 - 24439 | 12661.9 |
| is481-like element is1122 family transposase | VO01_RS15480 | Not Available | Positive | 24537 - 25496 | 36001.6 |
| hypothetical protein | VO01_RS17165 | Not Available | Negative | 26262 - 26489 | 7410.76 |
| hypothetical protein | VO01_RS15490 | Not Available | Negative | 26724 - 27326 | 21372.6 |
| hypothetical protein | VO01_RS16420 | Not Available | Positive | 28021 - 28572 | 20331.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
