Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS13980 | Not Available | Positive | 2961309 - 2962061 | 24872.1 |
| type iv secretion system protein | VO01_RS18050 | Not Available | Positive | 2962108 - 2963610 | 49323.6 |
| sco6880 family protein | VO01_RS13990 | Not Available | Positive | 2963623 - 2965131 | 53159.4 |
| atp/gtp-binding protein | VO01_RS13995 | Not Available | Positive | 2965186 - 2966883 | 61078.8 |
| type iv secretory system conjugative dna transfer family protein | VO01_RS14000 | Not Available | Positive | 2966880 - 2968658 | 62396.5 |
| duf4913 domain-containing protein | VO01_RS14005 | Not Available | Positive | 2968655 - 2969050 | 14280.6 |
| hypothetical protein | VO01_RS14010 | Not Available | Positive | 2969047 - 2969892 | 30208.9 |
| pp2c family protein-serine/threonine phosphatase | VO01_RS14015 | Not Available | Negative | 2969912 - 2971171 | 43738.4 |
| pp2c family protein-serine/threonine phosphatase | VO01_RS14020 | Not Available | Negative | 2971320 - 2972648 | 46165.9 |
| atp-binding protein | VO01_RS14025 | Not Available | Negative | 2972648 - 2973070 | 15208.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
