Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease/exonuclease/phosphatase family protein | VO01_RS13795 | Not Available | Positive | 2922679 - 2923524 | 31503.4 |
| hypothetical protein | VO01_RS13800 | Not Available | Positive | 2923518 - 2924177 | 22787.2 |
| 30s ribosomal protein s6 | VO01_RS17900 | Not Available | Positive | 2924325 - 2924816 | 17104.4 |
| glycosyltransferase family 9 protein | VO01_RS13805 | Not Available | Positive | 2924844 - 2925953 | 37747.1 |
| glycosyltransferase | VO01_RS13810 | Not Available | Positive | 2925950 - 2927002 | 37520.8 |
| glycosyltransferase | VO01_RS13815 | Not Available | Positive | 2927011 - 2928966 | 66949.9 |
| pfkb family carbohydrate kinase | VO01_RS13820 | Not Available | Positive | 2928963 - 2930345 | 46646.8 |
| sdr family oxidoreductase | VO01_RS13825 | Not Available | Positive | 2930396 - 2931100 | 24254.0 |
| hypothetical protein | VO01_RS13830 | Not Available | Negative | 2931183 - 2931533 | 12015.0 |
| cutinase family protein | VO01_RS16780 | Not Available | Negative | 2931610 - 2932428 | 28867.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
