Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s66 peptidase family protein | VO01_RS13755 | Not Available | Positive | 2915838 - 2916902 | 37929.2 |
| glycosyltransferase family 9 protein | VO01_RS13760 | Not Available | Negative | 2916951 - 2917985 | 36165.1 |
| deda family protein | VO01_RS13765 | Not Available | Negative | 2918034 - 2918699 | 23561.1 |
| hypothetical protein | VO01_RS17610 | Not Available | Positive | 2919115 - 2919252 | 4527.27 |
| tetr/acrr family transcriptional regulator | VO01_RS13770 | Not Available | Negative | 2919284 - 2919907 | 21835.9 |
| gnat family n-acetyltransferase | VO01_RS13775 | Not Available | Positive | 2919973 - 2920611 | 21637.2 |
| hypothetical protein | VO01_RS13780 | Not Available | Negative | 2920636 - 2920872 | 8714.4 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS13785 | Not Available | Positive | 2920918 - 2921400 | 17240.8 |
| type ii toxin-antitoxin system death-on-curing family toxin | VO01_RS16400 | Not Available | Negative | 2921458 - 2922297 | 30098.2 |
| hypothetical protein | VO01_RS17390 | Not Available | Negative | 2922297 - 2922458 | 5994.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
