Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase family protein | VO01_RS13710 | Not Available | Positive | 2907578 - 2908414 | 29829.9 |
| abc transporter atp-binding protein | VO01_RS13715 | Not Available | Negative | 2908306 - 2910321 | 71763.0 |
| ferritin-like domain-containing protein | VO01_RS13720 | Not Available | Positive | 2910723 - 2911556 | 29919.8 |
| hypothetical protein | VO01_RS16395 | Not Available | Negative | 2911634 - 2912854 | 42161.4 |
| hypothetical protein | VO01_RS13730 | Not Available | Positive | 2912844 - 2913218 | 12711.5 |
| glsb/yeaq/ymge family stress response membrane protein | VO01_RS13735 | Not Available | Negative | 2913372 - 2913650 | 9757.69 |
| response regulator transcription factor | VO01_RS13740 | Not Available | Positive | 2913775 - 2914443 | 25007.5 |
| type ii toxin-antitoxin system pard family antitoxin | VO01_RS16770 | Not Available | Negative | 2914488 - 2914661 | 6048.1 |
| fic/doc family protein | VO01_RS13745 | Not Available | Negative | 2914668 - 2915450 | 28861.9 |
| hypothetical protein | VO01_RS13750 | Not Available | Negative | 2915450 - 2915656 | 7060.31 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
