Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix hydrolase family protein | VO01_RS13610 | Not Available | Negative | 2884377 - 2884931 | 19908.0 |
| alpha/beta hydrolase | VO01_RS13615 | Not Available | Positive | 2885046 - 2885687 | 22259.3 |
| atp-dependent helicase | VO01_RS13620 | Not Available | Positive | 2885769 - 2890589 | 170505.0 |
| dna-formamidopyrimidine glycosylase family protein | VO01_RS13625 | Not Available | Positive | 2890617 - 2891420 | 29786.8 |
| amino acid permease | VO01_RS13630 | Not Available | Negative | 2891431 - 2892963 | 53973.9 |
| sigma-70 family rna polymerase sigma factor | VO01_RS13635 | Not Available | Positive | 2893218 - 2894207 | 35780.4 |
| antar domain-containing protein | VO01_RS13640 | Not Available | Negative | 2894237 - 2894815 | 19246.0 |
| pspc domain-containing protein | VO01_RS13645 | Not Available | Positive | 2895037 - 2895219 | 6750.89 |
| amidase | VO01_RS13650 | Not Available | Positive | 2895353 - 2897230 | 63469.8 |
| catalase | VO01_RS18135 | Not Available | Positive | 2897311 - 2897721 | 14482.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
