Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS17545 | Not Available | Negative | 168067 - 168243 | 6225.46 |
| p-loop atpase, sll1717 family | VO01_RS16975 | Not Available | Positive | 168500 - 170008 | 55986.3 |
| 3-hydroxyacyl-coa dehydrogenase | VO01_RS00845 | Not Available | Negative | 170048 - 170905 | 30187.7 |
| carbohydrate abc transporter permease | VO01_RS00850 | Not Available | Negative | 171013 - 171945 | 32657.5 |
| carbohydrate abc transporter permease | VO01_RS00855 | Not Available | Negative | 171938 - 172918 | 34018.3 |
| abc transporter substrate-binding protein | VO01_RS00860 | Not Available | Negative | 172915 - 174258 | 47149.7 |
| llm class flavin-dependent oxidoreductase | VO01_RS00865 | Not Available | Positive | 174533 - 175975 | 52259.1 |
| acyl-coa dehydrogenase family protein | VO01_RS00870 | Not Available | Positive | 175977 - 177248 | 44814.4 |
| acyl-coa dehydrogenase family protein | VO01_RS00875 | Not Available | Positive | 177257 - 178489 | 44210.1 |
| phosphatase pap2 family protein | VO01_RS00880 | Not Available | Positive | 178531 - 179388 | 30761.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
