Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS13560 | Not Available | Positive | 2877118 - 2877648 | 19762.5 |
| sprt-like domain-containing protein | VO01_RS13565 | Not Available | Positive | 2877685 - 2878194 | 18388.7 |
| cgnr zinc finger domain-containing protein | VO01_RS13570 | Not Available | Positive | 2878191 - 2878874 | 23756.8 |
| duf427 domain-containing protein | VO01_RS13575 | Not Available | Negative | 2878903 - 2879205 | 11314.2 |
| 2-phosphosulfolactate phosphatase | VO01_RS13580 | Not Available | Negative | 2879340 - 2879930 | 19657.3 |
| eve domain-containing protein | VO01_RS13585 | Not Available | Negative | 2879914 - 2880414 | 18910.6 |
| hypothetical protein | VO01_RS13590 | Not Available | Positive | 2880484 - 2881044 | 20511.3 |
| duf1684 domain-containing protein | VO01_RS13595 | Not Available | Positive | 2881098 - 2881745 | 23600.4 |
| dead/deah box helicase | VO01_RS13600 | Not Available | Positive | 2881982 - 2883523 | 53798.4 |
| tetr/acrr family transcriptional regulator | VO01_RS13605 | Not Available | Positive | 2883703 - 2884326 | 22639.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
