Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l23 | VO01_RS13460 | Not Available | Negative | 2853689 - 2853988 | 10932.4 |
| 50s ribosomal protein l4 | VO01_RS13465 | Not Available | Negative | 2853985 - 2854641 | 23047.7 |
| 50s ribosomal protein l3 | VO01_RS13470 | Not Available | Negative | 2854644 - 2855297 | 23186.1 |
| 30s ribosomal protein s10 | VO01_RS13475 | Not Available | Negative | 2855306 - 2855614 | 11441.1 |
| dna topoisomerase ib | VO01_RS13480 | Not Available | Negative | 2856055 - 2857023 | 36086.4 |
| elongation factor tu | VO01_RS13485 | Not Available | Negative | 2857173 - 2858366 | 43375.8 |
| elongation factor g | VO01_RS13490 | Not Available | Negative | 2858480 - 2860594 | 77475.5 |
| 30s ribosomal protein s7 | VO01_RS13495 | Not Available | Negative | 2860642 - 2861112 | 17225.9 |
| 30s ribosomal protein s12 | VO01_RS13500 | Not Available | Negative | 2861112 - 2861486 | 13815.1 |
| duf6121 family protein | VO01_RS13505 | Not Available | Negative | 2861751 - 2862176 | 14413.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
