Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l36 | VO01_RS13310 | Not Available | Negative | 2833361 - 2833474 | 4346.5 |
| translation initiation factor if-1 | VO01_RS13315 | Not Available | Negative | 2833547 - 2833768 | 8378.36 |
| is481-like element is1122 family transposase | VO01_RS13320 | Not Available | Negative | 2833957 - 2834919 | 36074.7 |
| mannitol-1-phosphate 5-dehydrogenase | VO01_RS13325 | Not Available | Negative | 2835098 - 2836267 | 41449.9 |
| pts sugar transporter subunit iia | VO01_RS17880 | Not Available | Negative | 2836264 - 2836701 | 15320.0 |
| pts mannitol transporter subunit iicb | VO01_RS13335 | Not Available | Negative | 2836810 - 2838339 | 52219.9 |
| phosphoenolpyruvate--protein phosphotransferase | VO01_RS13340 | Not Available | Negative | 2838453 - 2840123 | 56894.6 |
| hpr family phosphocarrier protein | VO01_RS13345 | Not Available | Negative | 2840120 - 2840386 | 8870.41 |
| pts sugar transporter subunit iib | VO01_RS13350 | Not Available | Negative | 2840490 - 2840870 | 12717.3 |
| 30s ribosomal protein s6 | VO01_RS17885 | Not Available | Positive | 2841081 - 2841197 | 4529.27 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
