Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i sam-dependent methyltransferase | VO01_RS13215 | Not Available | Positive | 2814643 - 2815845 | 42518.6 |
| duf4190 domain-containing protein | VO01_RS16380 | Not Available | Negative | 2815931 - 2816335 | 13582.5 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | VO01_RS13225 | Not Available | Negative | 2816439 - 2818058 | 55515.5 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | VO01_RS13230 | Not Available | Negative | 2818055 - 2818672 | 21356.4 |
| bifunctional alanine racemase/trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | VO01_RS13235 | Not Available | Negative | 2818682 - 2820373 | 59150.0 |
| alanine racemase | VO01_RS13240 | Not Available | Negative | 2820370 - 2821527 | 39758.7 |
| holo-acp synthase | VO01_RS13245 | Not Available | Negative | 2821524 - 2821883 | 12443.0 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | VO01_RS13250 | Not Available | Negative | 2821894 - 2823744 | 65979.1 |
| type i pantothenate kinase | VO01_RS13255 | Not Available | Positive | 2823895 - 2824854 | 35791.8 |
| hypothetical protein | VO01_RS17385 | Not Available | Negative | 2824856 - 2825023 | 6036.05 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
