Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| guab3 family imp dehydrogenase-related protein | VO01_RS13165 | Not Available | Negative | 2803140 - 2804258 | 39373.1 |
| hypothetical protein | VO01_RS13170 | Not Available | Negative | 2804251 - 2805378 | 38410.2 |
| imp dehydrogenase | VO01_RS13175 | Not Available | Negative | 2805546 - 2807048 | 52782.2 |
| abc transporter permease subunit | VO01_RS13180 | Not Available | Positive | 2807325 - 2808752 | 48185.1 |
| branched-chain amino acid abc transporter permease | VO01_RS13185 | Not Available | Positive | 2808759 - 2809730 | 34641.9 |
| abc transporter atp-binding protein | VO01_RS13190 | Not Available | Positive | 2809723 - 2810646 | 33186.1 |
| abc transporter atp-binding protein | VO01_RS13195 | Not Available | Positive | 2810643 - 2811401 | 27305.2 |
| abc transporter substrate-binding protein | VO01_RS13200 | Not Available | Negative | 2811692 - 2812972 | 43867.8 |
| eama family transporter rard | VO01_RS13205 | Not Available | Negative | 2813151 - 2814104 | 33341.0 |
| co-chaperone groes | VO01_RS13210 | Not Available | Negative | 2814202 - 2814498 | 10534.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
