Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS17870 | Not Available | Positive | 2791251 - 2792366 | 36943.6 |
| hypothetical protein | VO01_RS17875 | Not Available | Positive | 2792363 - 2793157 | 26377.8 |
| atp-dependent helicase | VO01_RS13125 | Not Available | Negative | 2793129 - 2795579 | 89438.0 |
| glycerophosphodiester phosphodiesterase family protein | VO01_RS13130 | Not Available | Negative | 2795709 - 2796821 | 39292.1 |
| bax inhibitor-1/ycca family protein | VO01_RS13135 | Not Available | Positive | 2796954 - 2797757 | 28328.2 |
| glutamine-hydrolyzing gmp synthase | VO01_RS13140 | Not Available | Negative | 2797866 - 2799446 | 56115.5 |
| duf3817 domain-containing protein | VO01_RS13145 | Not Available | Negative | 2799443 - 2799985 | 19968.4 |
| surf1 family cytochrome oxidase biogenesis protein | VO01_RS13150 | Not Available | Negative | 2799995 - 2800984 | 34275.7 |
| cation:proton antiporter | VO01_RS13155 | Not Available | Negative | 2800984 - 2802501 | 53478.1 |
| cation:proton antiporter regulatory subunit | VO01_RS13160 | Not Available | Negative | 2802505 - 2803038 | 18662.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
