Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dimethylargininase | VO01_RS13070 | Not Available | Negative | 2776835 - 2778019 | 41454.3 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2778374 - 2778490 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2778607 - 2781726 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2782155 - 2783675 | Not Available |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | VO01_RS13090 | Not Available | Negative | 2784253 - 2785878 | 56705.7 |
| phosphoribosylglycinamide formyltransferase | VO01_RS13095 | Not Available | Negative | 2785875 - 2786468 | 20867.0 |
| duf6350 family protein | VO01_RS13100 | Not Available | Negative | 2786478 - 2787758 | 42784.1 |
| succinate--coa ligase subunit alpha | VO01_RS13105 | Not Available | Negative | 2787919 - 2788806 | 29930.1 |
| adp-forming succinate--coa ligase subunit beta | VO01_RS13110 | Not Available | Negative | 2788834 - 2789997 | 40515.1 |
| oxygenase mpab family protein | VO01_RS13115 | Not Available | Positive | 2790245 - 2791066 | 29778.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
