Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ig-like domain repeat protein | VO01_RS17865 | Not Available | Negative | 2760849 - 2761460 | 20576.3 |
| s8 family peptidase | VO01_RS13025 | Not Available | Negative | 2761373 - 2764456 | 103963.0 |
| s8 family serine peptidase | VO01_RS13030 | Not Available | Negative | 2764772 - 2768362 | 119604.0 |
| nadp-dependent isocitrate dehydrogenase | VO01_RS13035 | Not Available | Negative | 2768609 - 2769823 | 45078.2 |
| gnat family n-acetyltransferase | VO01_RS13040 | Not Available | Positive | 2770058 - 2770510 | 16367.1 |
| is481-like element is1122 family transposase | VO01_RS13045 | Not Available | Negative | 2770521 - 2771483 | 36074.7 |
| mgmt family protein | VO01_RS13050 | Not Available | Positive | 2771588 - 2771908 | 11430.7 |
| hypothetical protein | VO01_RS13055 | Not Available | Positive | 2772056 - 2772493 | 14548.2 |
| abc transporter atp-binding protein | VO01_RS13060 | Not Available | Negative | 2772586 - 2774394 | 65231.1 |
| abc transporter atp-binding protein | VO01_RS13065 | Not Available | Negative | 2774391 - 2776157 | 63630.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
