Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3459 domain-containing protein | VO01_RS12975 | Not Available | Positive | 2749671 - 2751320 | 57298.1 |
| hypothetical protein | VO01_RS12980 | Not Available | Positive | 2751361 - 2751870 | 18510.7 |
| lysr substrate-binding domain-containing protein | VO01_RS12985 | Not Available | Negative | 2751880 - 2752737 | 30999.7 |
| mfs transporter | VO01_RS12990 | Not Available | Positive | 2752893 - 2754359 | 51145.1 |
| aldo/keto reductase | VO01_RS12995 | Not Available | Negative | 2754268 - 2755299 | 37009.4 |
| metal-dependent transcriptional regulator | VO01_RS13000 | Not Available | Positive | 2755408 - 2756091 | 24788.0 |
| nramp family divalent metal transporter | VO01_RS13005 | Not Available | Negative | 2756117 - 2757367 | 42678.5 |
| hypothetical protein | VO01_RS13010 | Not Available | Negative | 2757506 - 2758435 | 32855.0 |
| mfs transporter | VO01_RS13015 | Not Available | Negative | 2758491 - 2759789 | 44064.8 |
| formyltetrahydrofolate deformylase | VO01_RS13020 | Not Available | Positive | 2759868 - 2760740 | 32137.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
