Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-sigma factor domain-containing protein | VO01_RS12875 | Not Available | Negative | 2732563 - 2733426 | 29211.3 |
| sigma-70 family rna polymerase sigma factor | VO01_RS12880 | Not Available | Negative | 2733423 - 2734025 | 22380.7 |
| hypothetical protein | VO01_RS12885 | Not Available | Negative | 2734582 - 2735214 | 22362.5 |
| Trna-lys | Not Available | Not Available | Positive | 2735317 - 2735392 | Not Available |
| sgnh/gdsl hydrolase family protein | VO01_RS12895 | Not Available | Positive | 2735506 - 2736240 | 24894.9 |
| sgnh/gdsl hydrolase family protein | VO01_RS16375 | Not Available | Positive | 2736318 - 2737097 | 26297.0 |
| hypothetical protein | VO01_RS12905 | Not Available | Negative | 2737132 - 2738526 | 47354.0 |
| hypothetical protein | VO01_RS12910 | Not Available | Positive | 2738769 - 2739014 | 9244.84 |
| hypothetical protein | VO01_RS17505 | Not Available | Negative | 2739091 - 2739261 | 6275.24 |
| hypothetical protein | VO01_RS12915 | Not Available | Negative | 2739258 - 2739974 | 24628.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
