Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fabp family protein | VO01_RS12820 | Not Available | Negative | 2722210 - 2722809 | 21792.6 |
| hypothetical protein | VO01_RS12830 | Not Available | Negative | 2722981 - 2723247 | 8815.19 |
| dna-binding response regulator | VO01_RS12835 | Not Available | Positive | 2723301 - 2723993 | 24663.5 |
| mycothiol synthase | VO01_RS12840 | Not Available | Positive | 2723962 - 2724891 | 32237.9 |
| rna degradosome polyphosphate kinase | VO01_RS12845 | Not Available | Positive | 2724985 - 2727168 | 81677.8 |
| nudix hydrolase | VO01_RS12850 | Not Available | Positive | 2727201 - 2728151 | 34063.5 |
| phosphate abc transporter substrate-binding protein psts | VO01_RS12855 | Not Available | Positive | 2728352 - 2729449 | 37008.9 |
| phosphate abc transporter permease subunit pstc | VO01_RS12860 | Not Available | Positive | 2729558 - 2730559 | 34988.4 |
| phosphate abc transporter permease psta | VO01_RS12865 | Not Available | Positive | 2730559 - 2731659 | 38783.9 |
| phosphate abc transporter atp-binding protein pstb | VO01_RS12870 | Not Available | Positive | 2731703 - 2732482 | 28341.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
