Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytr c-terminal domain-containing protein | VO01_RS12725 | Not Available | Negative | 2704301 - 2704876 | 19595.0 |
| duf3263 domain-containing protein | VO01_RS12730 | Not Available | Negative | 2704909 - 2705238 | 12260.6 |
| peptide-methionine (r)-s-oxide reductase msrb | VO01_RS12735 | Not Available | Positive | 2705452 - 2705853 | 15050.4 |
| nitroreductase | VO01_RS16370 | Not Available | Positive | 2705859 - 2706503 | 22714.9 |
| Trna-thr | Not Available | Not Available | Positive | 2706477 - 2706549 | Not Available |
| dsba family protein | VO01_RS12745 | Not Available | Negative | 2706591 - 2707508 | 31810.3 |
| abc transporter atp-binding protein | VO01_RS12750 | Not Available | Positive | 2707826 - 2708926 | 39264.1 |
| duf4032 domain-containing protein | VO01_RS12755 | Not Available | Positive | 2709027 - 2710331 | 49062.4 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | VO01_RS12760 | Not Available | Negative | 2710404 - 2711459 | 37109.7 |
| cysteine--trna ligase | VO01_RS12765 | Not Available | Negative | 2711449 - 2712903 | 52545.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
