Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold-shock protein | VO01_RS12675 | Not Available | Negative | 2693477 - 2693860 | 13450.2 |
| hypothetical protein | VO01_RS12680 | Not Available | Positive | 2694017 - 2694286 | 9566.23 |
| helicase-associated domain-containing protein | VO01_RS12685 | Not Available | Positive | 2694297 - 2696183 | 64733.9 |
| dna repair helicase xpb | VO01_RS12690 | Not Available | Positive | 2696204 - 2697844 | 59808.9 |
| response regulator transcription factor | VO01_RS12695 | Not Available | Positive | 2697921 - 2698613 | 25628.8 |
| sensor histidine kinase | VO01_RS12700 | Not Available | Positive | 2698737 - 2700497 | 63057.1 |
| wxg100 family type vii secretion target | VO01_RS12705 | Not Available | Positive | 2700544 - 2700834 | 10093.7 |
| is481-like element is1122 family transposase | VO01_RS16765 | Not Available | Positive | 2700932 - 2701891 | 36031.6 |
| chaperonin groel | VO01_RS12715 | Not Available | Negative | 2702042 - 2703661 | 56784.1 |
| cold-shock protein | VO01_RS12720 | Not Available | Negative | 2703855 - 2704073 | 7809.23 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
