Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-threonylcarbamoyladenylate synthase | VO01_RS12625 | Not Available | Positive | 2682541 - 2683323 | 28744.0 |
| histone-like nucleoid-structuring protein lsr2 | VO01_RS12630 | Not Available | Positive | 2683689 - 2684039 | 12714.8 |
| hypothetical protein | VO01_RS17590 | Not Available | Positive | 2684261 - 2685592 | 42789.1 |
| bacterial transcriptional activator domain-containing protein | VO01_RS12640 | Not Available | Positive | 2685827 - 2686591 | 27134.2 |
| prolyl oligopeptidase family serine peptidase | VO01_RS12645 | Not Available | Negative | 2686646 - 2688703 | 74751.7 |
| hnh endonuclease | VO01_RS12650 | Not Available | Negative | 2688735 - 2689232 | 18117.9 |
| c40 family peptidase | VO01_RS18130 | Not Available | Negative | 2689591 - 2690436 | 29220.2 |
| metal-dependent transcriptional regulator | VO01_RS12660 | Not Available | Negative | 2690839 - 2691537 | 25411.5 |
| phosphoserine transaminase | VO01_RS12665 | Not Available | Positive | 2691646 - 2692764 | 40120.4 |
| duf3027 domain-containing protein | VO01_RS12670 | Not Available | Negative | 2692837 - 2693484 | 22894.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
