Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fic family protein | VO01_RS00745 | Not Available | Positive | 148114 - 149400 | 46471.1 |
| tetr/acrr family transcriptional regulator | VO01_RS00750 | Not Available | Negative | 149431 - 150177 | 26345.9 |
| dha2 family efflux mfs transporter permease subunit | VO01_RS00755 | Not Available | Positive | 150258 - 151778 | 53076.7 |
| helix-turn-helix domain-containing protein | VO01_RS00760 | Not Available | Positive | 151930 - 152202 | 9925.36 |
| type ii toxin-antitoxin system hipa family toxin | VO01_RS00765 | Not Available | Positive | 152195 - 153394 | 43399.2 |
| alpha/beta fold hydrolase | VO01_RS00770 | Not Available | Positive | 153472 - 154326 | 29317.2 |
| tetr/acrr family transcriptional regulator | VO01_RS00775 | Not Available | Positive | 154319 - 154903 | 20027.8 |
| hypothetical protein | VO01_RS00780 | Not Available | Positive | 154900 - 155319 | 14584.2 |
| hypothetical protein | VO01_RS00785 | Not Available | Negative | 155316 - 155711 | 13926.6 |
| tetr/acrr family transcriptional regulator | VO01_RS00790 | Not Available | Negative | 155722 - 156444 | 26476.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
