Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coa-acylating methylmalonate-semialdehyde dehydrogenase | VO01_RS12510 | Not Available | Negative | 2662638 - 2664143 | 53350.5 |
| class i fructose-bisphosphate aldolase | VO01_RS12515 | Not Available | Negative | 2664196 - 2665137 | 32650.2 |
| 5-dehydro-2-deoxygluconokinase | VO01_RS12520 | Not Available | Negative | 2665134 - 2666129 | 35337.8 |
| gnat family n-acetyltransferase | VO01_RS12525 | Not Available | Negative | 2666247 - 2666738 | 17359.5 |
| tetr/acrr family transcriptional regulator | VO01_RS12530 | Not Available | Negative | 2666749 - 2667375 | 21881.2 |
| sdr family oxidoreductase | VO01_RS12535 | Not Available | Positive | 2667466 - 2668188 | 24026.8 |
| gnat family n-acetyltransferase | VO01_RS12540 | Not Available | Negative | 2668203 - 2668733 | 18944.8 |
| is481-like element is1122 family transposase | VO01_RS12545 | Not Available | Positive | 2668928 - 2669887 | 36031.6 |
| hypothetical protein | VO01_RS12550 | Not Available | Positive | 2670032 - 2670298 | 8929.6 |
| type iv secretory system conjugative dna transfer family protein | VO01_RS12555 | Not Available | Positive | 2670298 - 2671623 | 47514.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
