Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | VO01_RS12460 | Not Available | Positive | 2651981 - 2652685 | 24529.4 |
| 30s ribosomal protein s6 | VO01_RS12465 | Not Available | Negative | 2652974 - 2653821 | 29332.3 |
| sdr family oxidoreductase | VO01_RS12470 | Not Available | Positive | 2653955 - 2654704 | 26342.9 |
| 3-hydroxyacyl-coa dehydrogenase family protein | VO01_RS12475 | Not Available | Negative | 2654733 - 2655698 | 34217.6 |
| sugar phosphate isomerase/epimerase family protein | VO01_RS12480 | Not Available | Negative | 2655710 - 2656684 | 35921.2 |
| 4'-phosphopantetheinyl transferase | VO01_RS12485 | Not Available | Negative | 2656806 - 2657486 | 24510.5 |
| hypothetical protein | VO01_RS12490 | Not Available | Negative | 2657660 - 2657905 | 8965.65 |
| hypothetical protein | VO01_RS12495 | Not Available | Negative | 2658056 - 2658361 | 11047.0 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | VO01_RS12500 | Not Available | Negative | 2659728 - 2661629 | 67493.1 |
| 5-deoxy-glucuronate isomerase | VO01_RS12505 | Not Available | Negative | 2661646 - 2662584 | 33274.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
