Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter substrate-binding protein | VO01_RS12410 | Not Available | Positive | 2642446 - 2643501 | 35432.2 |
| abc transporter permease | VO01_RS12415 | Not Available | Positive | 2643601 - 2644644 | 36322.4 |
| atp-binding cassette domain-containing protein | VO01_RS12420 | Not Available | Positive | 2644641 - 2645570 | 32080.7 |
| gntr family transcriptional regulator | VO01_RS12425 | Not Available | Positive | 2645624 - 2646385 | 27490.2 |
| gnat family n-acetyltransferase | VO01_RS12430 | Not Available | Positive | 2646424 - 2646879 | 16018.0 |
| dihydroxyacetone kinase family protein | VO01_RS12435 | Not Available | Positive | 2646962 - 2648698 | 59256.2 |
| ribose-5-phosphate isomerase | VO01_RS12440 | Not Available | Positive | 2648751 - 2649212 | 16322.3 |
| triose-phosphate isomerase family protein | VO01_RS12445 | Not Available | Positive | 2649217 - 2650023 | 27793.1 |
| gntr family transcriptional regulator | VO01_RS12450 | Not Available | Positive | 2650039 - 2650758 | 26304.4 |
| hypothetical protein | VO01_RS12455 | Not Available | Negative | 2651375 - 2651812 | 15227.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
