Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | VO01_RS12365 | Not Available | Negative | 2629399 - 2630265 | 30954.5 |
| abc transporter permease | VO01_RS12370 | Not Available | Negative | 2630262 - 2631254 | 35473.0 |
| abc transporter permease | VO01_RS12375 | Not Available | Negative | 2631251 - 2632213 | 33287.8 |
| abc transporter substrate-binding protein | VO01_RS12380 | Not Available | Negative | 2632217 - 2633896 | 59194.1 |
| glycoside hydrolase family 127 protein | VO01_RS12385 | Not Available | Negative | 2634042 - 2636051 | 71513.0 |
| dna helicase recq | VO01_RS12390 | Not Available | Negative | 2636468 - 2638351 | 68455.9 |
| thioredoxin | VO01_RS12395 | Not Available | Negative | 2638464 - 2638865 | 14074.5 |
| exem/nuch family extracellular endonuclease | VO01_RS12400 | Not Available | Negative | 2638951 - 2641086 | 73848.9 |
| hypothetical protein | VO01_RS17855 | Not Available | Negative | 2641197 - 2641967 | 27122.8 |
| hypothetical protein | VO01_RS12405 | Not Available | Positive | 2642017 - 2642439 | 14905.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
