Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar transferase | VO01_RS12265 | Not Available | Negative | 2604287 - 2605831 | 55920.4 |
| right-handed parallel beta-helix repeat-containing protein | VO01_RS12270 | Not Available | Negative | 2606177 - 2608786 | 88332.1 |
| right-handed parallel beta-helix repeat-containing protein | VO01_RS12275 | Not Available | Negative | 2609075 - 2611702 | 89880.5 |
| adenylyltransferase/cytidyltransferase family protein | VO01_RS12280 | Not Available | Positive | 2612080 - 2612577 | 17918.5 |
| prolyl aminopeptidase | VO01_RS12285 | Not Available | Negative | 2612606 - 2613574 | 35145.6 |
| gdsl-type esterase/lipase family protein | VO01_RS12290 | Not Available | Positive | 2613693 - 2614484 | 28385.8 |
| copg family transcriptional regulator | VO01_RS12295 | Not Available | Positive | 2614558 - 2614809 | 9121.73 |
| type ii toxin-antitoxin system pemk/mazf family toxin | VO01_RS12300 | Not Available | Positive | 2614827 - 2615150 | 11414.9 |
| duf1349 domain-containing protein | VO01_RS12305 | Not Available | Positive | 2615178 - 2615789 | 21620.0 |
| acyl-coa dehydrogenase | VO01_RS12310 | Not Available | Negative | 2615802 - 2618033 | 80078.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
