Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 39 protein | VO01_RS12215 | Not Available | Negative | 2588299 - 2589729 | 50983.2 |
| 30s ribosomal protein s6 | VO01_RS12220 | Not Available | Negative | 2590082 - 2590610 | 19474.1 |
| gdsl-type esterase/lipase family protein | VO01_RS12225 | Not Available | Negative | 2590678 - 2591433 | 27882.7 |
| hypothetical protein | VO01_RS12230 | Not Available | Negative | 2591516 - 2591887 | 13437.8 |
| polysaccharide biosynthesis tyrosine autokinase | VO01_RS12235 | Not Available | Negative | 2592159 - 2593556 | 48764.5 |
| hypothetical protein | VO01_RS12240 | Not Available | Negative | 2593553 - 2594908 | 46116.6 |
| pkd domain-containing protein | VO01_RS12245 | Not Available | Negative | 2595070 - 2600964 | 201918.0 |
| glycosyltransferase family 4 protein | VO01_RS12250 | Not Available | Negative | 2601014 - 2602255 | 43523.3 |
| cdp-alcohol phosphatidyltransferase family protein | VO01_RS12255 | Not Available | Negative | 2602252 - 2603058 | 28240.5 |
| duf1972 domain-containing protein | VO01_RS12260 | Not Available | Negative | 2603055 - 2604287 | 44646.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
