Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ph domain-containing protein | VO01_RS12065 | Not Available | Negative | 2559823 - 2560311 | 17406.7 |
| duf3180 domain-containing protein | VO01_RS12070 | Not Available | Negative | 2560362 - 2560844 | 16268.3 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | VO01_RS12075 | Not Available | Negative | 2560841 - 2561743 | 31716.6 |
| duf3592 domain-containing protein | VO01_RS12080 | Not Available | Negative | 2561737 - 2562447 | 23572.0 |
| dihydropteroate synthase | VO01_RS12085 | Not Available | Negative | 2562452 - 2563324 | 29505.9 |
| gtp cyclohydrolase i | VO01_RS12090 | Not Available | Negative | 2563321 - 2563905 | 20233.4 |
| atp-dependent zinc metalloprotease ftsh | VO01_RS12095 | Not Available | Negative | 2563910 - 2565910 | 71621.9 |
| hypoxanthine phosphoribosyltransferase | VO01_RS12100 | Not Available | Negative | 2566068 - 2566619 | 20242.4 |
| trna lysidine(34) synthetase tils | VO01_RS12105 | Not Available | Negative | 2566621 - 2567646 | 35530.2 |
| inorganic diphosphatase | VO01_RS12110 | Not Available | Positive | 2567701 - 2568222 | 19330.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
