Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS11870 | Not Available | Positive | 2517269 - 2517604 | 12508.4 |
| marr family winged helix-turn-helix transcriptional regulator | VO01_RS11875 | Not Available | Positive | 2517729 - 2518166 | 16209.8 |
| gnat family n-acetyltransferase | VO01_RS11880 | Not Available | Negative | 2518195 - 2518761 | 19871.6 |
| gh1 family beta-glucosidase | VO01_RS11885 | Not Available | Negative | 2518758 - 2520263 | 54427.5 |
| xylose isomerase | VO01_RS11890 | Not Available | Positive | 2520470 - 2521663 | 43826.4 |
| helix-turn-helix transcriptional regulator | VO01_RS16740 | Not Available | Negative | 2521757 - 2521960 | 7321.79 |
| hypothetical protein | VO01_RS11900 | Not Available | Negative | 2521957 - 2522349 | 13956.3 |
| hypothetical protein | VO01_RS17120 | Not Available | Negative | 2522464 - 2523099 | 22053.5 |
| 30s ribosomal protein s6 | VO01_RS17125 | Not Available | Positive | 2523203 - 2523328 | 4532.24 |
| multiple monosaccharide abc transporter permease | VO01_RS11915 | Not Available | Negative | 2523407 - 2524594 | 41549.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
