Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| luxr family transcriptional regulator | VO01_RS11815 | Not Available | Positive | 2506170 - 2508947 | 98930.3 |
| Trna-ser | Not Available | Not Available | Positive | 2508993 - 2509080 | Not Available |
| hypothetical protein | VO01_RS11825 | Not Available | Negative | 2509169 - 2509378 | 7741.61 |
| hypothetical protein | VO01_RS11830 | Not Available | Negative | 2509399 - 2509833 | 14793.2 |
| hypothetical protein | VO01_RS11840 | Not Available | Positive | 2511027 - 2511677 | 22966.8 |
| aminoglycoside phosphotransferase family protein | VO01_RS11845 | Not Available | Positive | 2511674 - 2512567 | 31249.0 |
| heparan-alpha-glucosaminide n-acetyltransferase domain-containing protein | VO01_RS11850 | Not Available | Negative | 2512564 - 2513643 | 36987.1 |
| multidrug effflux mfs transporter | VO01_RS11855 | Not Available | Negative | 2513684 - 2514919 | 43077.0 |
| aminotransferase class v-fold plp-dependent enzyme | VO01_RS11860 | Not Available | Negative | 2515050 - 2516105 | 36690.6 |
| lysr family transcriptional regulator | VO01_RS11865 | Not Available | Positive | 2516187 - 2517143 | 33114.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
