Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | VO01_RS11770 | Not Available | Negative | 2489507 - 2490772 | 43885.6 |
| recombination mediator recr | VO01_RS11775 | Not Available | Negative | 2490870 - 2491469 | 21829.3 |
| dna polymerase iii subunit gamma and tau | VO01_RS11780 | Not Available | Negative | 2491476 - 2493995 | 85494.4 |
| httm domain-containing protein | VO01_RS11785 | Not Available | Negative | 2494041 - 2495252 | 45055.4 |
| duf5819 family protein | VO01_RS11790 | Not Available | Negative | 2495249 - 2496109 | 31931.1 |
| choice-of-anchor g family protein | VO01_RS11795 | Not Available | Negative | 2496253 - 2501223 | 158232.0 |
| acetate/propionate family kinase | VO01_RS11800 | Not Available | Negative | 2501511 - 2502701 | 41989.7 |
| phosphate acetyltransferase | VO01_RS11805 | Not Available | Negative | 2502756 - 2504873 | 74642.5 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 2504923 - 2505019 | Not Available |
| sdr family oxidoreductase | VO01_RS11810 | Not Available | Positive | 2505106 - 2505759 | 22660.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
