Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS11725 | Not Available | Negative | 2478529 - 2479113 | 18682.1 |
| duf4012 domain-containing protein | VO01_RS11730 | Not Available | Negative | 2479201 - 2480946 | 60703.0 |
| hypothetical protein | VO01_RS11735 | Not Available | Negative | 2481018 - 2482001 | 32203.9 |
| polysaccharide biosynthesis tyrosine autokinase | VO01_RS11740 | Not Available | Negative | 2482315 - 2483709 | 48808.7 |
| hypothetical protein | VO01_RS18030 | Not Available | Positive | 2483910 - 2484035 | 4433.49 |
| thymidine kinase | VO01_RS11745 | Not Available | Negative | 2484067 - 2484741 | 24732.6 |
| luxr c-terminal-related transcriptional regulator | VO01_RS11750 | Not Available | Negative | 2484742 - 2485452 | 25304.2 |
| rv2578c family radical sam protein | VO01_RS11755 | Not Available | Negative | 2485533 - 2486717 | 42662.1 |
| malate:quinone oxidoreductase | VO01_RS11760 | Not Available | Negative | 2486798 - 2488276 | 53933.8 |
| aspartate-semialdehyde dehydrogenase | VO01_RS11765 | Not Available | Negative | 2488363 - 2489457 | 37755.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
