Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Clavibacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Clavibacter |
| Species | Clavibacter michiganensis |
| Strain | subsp. insidiosus strain R1-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Triticum aestivum, Solanum tuberosum, Solanum lycopersicum |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | eggplant |
Genome Summary
Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid
Gene Summary
Adenine Count
7938 bp
Thymine Count
7426 bp
Guanine Count
15813 bp
Cytosine Count
16513 bp
Genome Length
47690 bp
Protein-coding Genes
48 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | VO01_RS11675 | Not Available | Negative | 2467789 - 2467971 | 6423.71 |
| transglycosylase domain-containing protein | VO01_RS11680 | Not Available | Positive | 2468077 - 2470614 | 88207.0 |
| metallophosphoesterase | VO01_RS11685 | Not Available | Positive | 2470614 - 2471558 | 34069.6 |
| Trna-pro | Not Available | Not Available | Positive | 2471621 - 2471694 | Not Available |
| hypothetical protein | VO01_RS11695 | Not Available | Negative | 2471802 - 2472254 | 15627.4 |
| acyltransferase family protein | VO01_RS11700 | Not Available | Negative | 2472251 - 2473531 | 45568.6 |
| transglycosylase domain-containing protein | VO01_RS11705 | Not Available | Negative | 2473677 - 2475908 | 79181.1 |
| llm class flavin-dependent oxidoreductase | VO01_RS11710 | Not Available | Negative | 2476001 - 2477032 | 36044.8 |
| vanz family protein | VO01_RS11715 | Not Available | Positive | 2477101 - 2477628 | 18352.5 |
| sortase | VO01_RS11720 | Not Available | Negative | 2477668 - 2478210 | 16878.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Goss s wilt | Causes | PMC6622472 |
| Bacterial wilt | Causes | PMC9190982 |
| Canker | Causes | PMC9190982 |
| Bacterial wilt and canker of tomato | Causes | PMC9190982 |
| Potato ring rot | Causes | PMC9190982 |
| Gross's wilt of maize | Causes | PMC9190982 |
| Bacterial canker of pepper | Causes | PMC9190982 |
| Bacterial wilt of alfalfa | Causes | PMC9190982 |
| Bacterial mosaic of wheat | Causes | PMC9190982 |
| Bean leaf yellowing | Causes | PMC9190982 |
